diff --git a/package.json b/package.json
index db8c7ab8c..af11b8a5c 100644
--- a/package.json
+++ b/package.json
@@ -7,7 +7,7 @@
     "version": "pnpm i --frozen-lockfile=false && git add pnpm-lock.yaml",
     "prepare": "if test \"$NODE_ENV\" != \"production\" && test \"$CI\" != \"true\" ; then husky install ; fi",
     "prepack": "pnpm -r prepack",
-    "dev": "pnpm -r prepack --incremental && pnpm start:dev",
+    "dev": "pnpm -r prepack && pnpm start:dev",
     "start:dev": "pnpm -r --parallel --filter=!@logto/integration-tests dev",
     "start": "cd packages/core && NODE_ENV=production node .",
     "cli": "logto",
diff --git a/packages/cli/package.json b/packages/cli/package.json
index d6b7c7630..b6e8b925d 100644
--- a/packages/cli/package.json
+++ b/packages/cli/package.json
@@ -21,6 +21,7 @@
     "precommit": "lint-staged",
     "prepare:package-json": "node -p \"'export const packageJson = ' + JSON.stringify(require('./package.json'), undefined, 2) + ';'\" > src/package-json.ts",
     "build": "rimraf lib && pnpm prepare:package-json && tsc -p tsconfig.build.json",
+    "dev": "tsc -p tsconfig.build.json --watch --preserveWatchOutput --incremental",
     "start": "node .",
     "start:dev": "ts-node --files src/index.ts",
     "lint": "eslint --ext .ts src",
diff --git a/packages/cli/src/commands/database/alteration/index.test.ts b/packages/cli/src/commands/database/alteration/index.test.ts
index 4a2cc37bc..8ea61e772 100644
--- a/packages/cli/src/commands/database/alteration/index.test.ts
+++ b/packages/cli/src/commands/database/alteration/index.test.ts
@@ -15,9 +15,9 @@ const pool = createMockPool({
 
 describe('getUndeployedAlterations()', () => {
   const files = Object.freeze([
-    { filename: '1.0.0-1663923770-a.js', path: '/alterations/1.0.0-1663923770-a.js' },
-    { filename: '1.0.0-1663923771-b.js', path: '/alterations/1.0.0-1663923771-b.js' },
-    { filename: '1.0.0-1663923772-c.js', path: '/alterations/1.0.0-1663923772-c.js' },
+    { filename: '1.0.0-1663923770-a.js', path: '/alterations-js/1.0.0-1663923770-a.js' },
+    { filename: '1.0.0-1663923771-b.js', path: '/alterations-js/1.0.0-1663923771-b.js' },
+    { filename: '1.0.0-1663923772-c.js', path: '/alterations-js/1.0.0-1663923772-c.js' },
   ]);
 
   beforeEach(() => {
diff --git a/packages/cli/src/commands/database/alteration/index.ts b/packages/cli/src/commands/database/alteration/index.ts
index 6c45de635..5055e013d 100644
--- a/packages/cli/src/commands/database/alteration/index.ts
+++ b/packages/cli/src/commands/database/alteration/index.ts
@@ -38,7 +38,7 @@ const importAlterationScript = async (filePath: string): Promise<AlterationScrip
 };
 
 export const getAlterationFiles = async (): Promise<AlterationFile[]> => {
-  const alterationDirectory = getPathInModule('@logto/schemas', 'alterations');
+  const alterationDirectory = getPathInModule('@logto/schemas', 'alterations-js');
 
   /**
    * We copy all alteration scripts to the CLI package root directory,
@@ -88,6 +88,7 @@ export const getLatestAlterationTimestamp = async () => {
 
 export const getUndeployedAlterations = async (pool: DatabasePool) => {
   const databaseTimestamp = await getCurrentDatabaseAlterationTimestamp(pool);
+
   const files = await getAlterationFiles();
 
   return files.filter(({ filename }) => getTimestampFromFilename(filename) > databaseTimestamp);
diff --git a/packages/schemas/.gitignore b/packages/schemas/.gitignore
index be7e542f8..edd76d6a2 100644
--- a/packages/schemas/.gitignore
+++ b/packages/schemas/.gitignore
@@ -1,4 +1,2 @@
 /src/db-entries
-/alterations/*.d.ts
-/alterations/*.js
-/alterations/*.tsbuildinfo
+/alterations-js
diff --git a/packages/schemas/package.json b/packages/schemas/package.json
index b53715907..1d3c336a5 100644
--- a/packages/schemas/package.json
+++ b/packages/schemas/package.json
@@ -13,7 +13,7 @@
     "precommit": "lint-staged",
     "version": "./update-next.sh && git add alterations/",
     "generate": "rm -rf src/db-entries && ts-node src/gen/index.ts && eslint \"src/db-entries/**\" --fix",
-    "build:alterations": "rm -rf alterations/*.d.ts alterations/*.js && tsc -p tsconfig.build.alterations.json",
+    "build:alterations": "rm -rf alterations-js && tsc -p tsconfig.build.alterations.json",
     "build": "pnpm generate && rm -rf lib/ && tsc -p tsconfig.build.json && pnpm build:alterations",
     "dev": "tsc -p tsconfig.build.json --watch --preserveWatchOutput --incremental",
     "lint": "eslint --ext .ts src",
diff --git a/packages/schemas/tsconfig.build.alterations.json b/packages/schemas/tsconfig.build.alterations.json
index 79097ebc4..96cde8fa1 100644
--- a/packages/schemas/tsconfig.build.alterations.json
+++ b/packages/schemas/tsconfig.build.alterations.json
@@ -1,7 +1,7 @@
 {
   "extends": "./tsconfig",
   "compilerOptions": {
-    "outDir": "alterations",
+    "outDir": "alterations-js",
   },
   "include": ["alterations"],
   "exclude": []